Natural Products and Bioprospecting2017Full TextOpen AccessHighly Cited

Natural Products Diversity of Marine Ascidians (Tunicates; Ascidiacea) and Successful Drugs in Clinical Development

Satheesh Kumar Palanisamy, Natesan Mannangatti Rajendran, Angela Marino

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Original research published by Palanisamy et al. in Natural Products and Bioprospecting. Redistributed under Open Access — see publisher for license terms. MedTech Research Group provides these references for informational purposes. We do not conduct original research. All studies are the work of their respective authors and institutions.

Abstract

This present study reviewed the chemical diversity of marine ascidians and their pharmacological applications, challenges and recent developments in marine drug discovery reported during 1994-2014, highlighting the structural activity of compounds produced by these specimens. Till date only 5% of living ascidian species were studied from <3000 species, this study represented from family didemnidae (32%), polyclinidae (22%), styelidae and polycitoridae (11-12%) exhibiting the highest number of promising MNPs. Close to 580 compound structures are here discussed in terms of their occurrence, structural type and reported biological activity. Anti-cancer drugs are the main area of interest in the screening of MNPs from ascidians (64%), followed by anti-malarial (6%) and remaining others. FDA approved ascidian compounds mechanism of action along with other compounds status of clinical trials (phase 1 to phase 3) are discussed here in. This review highlights recent developments in the area of natural products chemistry and biotechnological approaches are emphasized.

Full Text
01

Abstract

This present study reviewed the chemical diversity of marine ascidians and their pharmacological applications, challenges and recent developments in marine drug discovery reported during 1994–2014, highlighting the structural activity of compounds produced by these specimens. Till date only 5% of living ascidian species were studied from &lt;3000 species, this study represented from family didemnidae (32%), polyclinidae (22%), styelidae and polycitoridae (11–12%) exhibiting the highest number of promising MNPs. Close to 580 compound structures are here discussed in terms of their occurrence, structural type and reported biological activity. Anti-cancer drugs are the main area of interest in the screening of MNPs from ascidians (64%), followed by anti-malarial (6%) and remaining others. FDA approved ascidian compounds mechanism of action along with other compounds status of clinical trials (phase 1 to phase 3) are discussed here in. This review highlights recent developments in the area of natural products chemistry and biotechnological approaches are emphasized.

02

Introduction

The study of marine natural products (MNPs) is becoming ever more sophisticated and an increasingly collaborative effort between marine biologist, chemist and pharmacologist, which involves the discovery of new natural products to enter preclinical studies and clinical tests. Since the 1990s, several MNPs and their applications towards marine biotechnological and therapeutical potential were reported. Large numbers of bioactive compounds were dragged up from marine invertebrates, especially sponges, ascidians, bryozoans and molluscs in which some of them are approved by FDA and currently utilized in clinical trials [ 1 ]. Ascidians or sea squirts (Phylum: Chordata, Class: Ascidiacea) are also known as tunicates due to their external covering, found tied to rocks and high-current fields. There are approximately 3000 living species of ascidians were reported [ 2 ]. The production of chemical compounds is principally important for soft bodied ascidian species, which use secondary metabolites to deter predatory fishes, to compete for space, to control settlement and growth of microbial fauna and other fouling organisms. Ascidians represent the most highly evolved group of marine organisms commonly investigated for identification of MNPs and provide rich sources of bioactive secondary metabolite with promising potential biomedical applications [ 3 – 5 ]. So far a few novel compounds have been purified and characterized with a view of developing marine drug discovery. However, the most well known didemnins has been isolated from whole body homogenates of Caribbean ascidians belonging to the genus of Trididenium sp. [ 6 ]. More than 80% of new ascidians compounds contain nitrogen, and nearly 70% of nitrogenous metabolites are alkaloids [ 7 – 9 ]. These compounds often exhibit a range of biological activities such as cytotoxicity, antibiotic, immunosuppressive activities, inhibition of topoisomerases and cyclin kinases [ 10 ]. On the other hand, non-nitrogenous metabolites are fewer available in ascidians and also less significant. Hence, identification of the biogenetic origin of ascidian natural products is often challenging [ 11 ]. The first bioactive metabolite geranyl hydroquinone was isolated from the ascidian Aplidium sp. [ 12 ]; only 230 metabolites were isolated from ascidians during 1974–1992 [ 3 ]. At that time, a wide-ranging attention has focused on ascidians because of their biologically active metabolites and the chemical diversity of ascidians has become one of the most significant sources of MNPs. It has been demonstrated that marine ecosystems are essential producers of unusual chemical compounds and potent bioactivities [ 4 , 5 , 9 , 13 ]. Nonetheless, significant research in the area of marine pharmacology is a very recent origin, and also few products (or their analogues) have already reached the market as therapeutic drugs. Indeed, ascidian-derived natural products have yielded promising drug leads, among which ecteinascidin 743 (Yondelis ® ) and dehydrodidemnin B (Aplidin ® ) are in clinical usage for the treatment of specific cancers [ 14 , 15 ]. The research attempt on MNPs has not targeted all marine invertebrates equally. Ascidians are one of the most intensely studied organisms during the 21st century so that 572 secondary metabolites were reported from 1994 to 2014. This present study represented MNPs studied from family didemnidae (32%), polyclinidae (22%), styelidae and polycitoridae (11–12%) exhibiting the highest number of promising MNPs (Fig. 1 ). The distribution of chemistry class of ascidian MNPs are given in (Fig. 2 ). Close to 580 compound structures are here discussed in terms of their occurrence, structural type and reported biological activity. Anti-cancer drugs are the main area of interest in the screening of MNPs from ascidians (64%), followed by anti-malarial (6%) and remaining others (Fig. 3 ). The National Cancer Institute-United states estimate that approximately 1% of MNPs showing anti-tumor cytotoxicity properties as against only 0.01% amongst their terrestrial counterparts. Accordingly, finding MNPs research must being continued to progress to improve existing therapies and to develop novel cures. Fig. 1 Marine nature products studied from the family ascidian on 1994–2014 Fig. 2 Distribution of chemistry class of MNPs with high biomedical potential application studied from 1994 to 2014 Fig. 3 Distribution of drug classes of MNPs with high biomedical potential application studied from 1994 to 2014 This review focuses on the chemical diversity of marine ascidians. The recent research on MNPs has been surveyed at relatively frequent intervals [ 4 , 5 , 9 , 13 ]. Davidson [ 3 ] was published the first review on secondary metabolites derived ascidians from 1988 to 1993. Additionally, in contrast to the review of ascidian metabolites, the present study provides complete list of the compounds with biological activities; the primary focus of this article is addressed to s

03

Natural Products from Marine Ascidians

MNPs can also be prepared by chemical synthesis method by both total synthesis and semisynthesis method and it is playing a major role in drug discovery process. In recent years’ notable studies have been carried out in the area of chemical diversity from the marine ascidians. Major alkaloids were reported in ascidians of purple, blue, green, and brown morphs of Cystodes dellechiajei collected from Mediterranean Sea [ 16 ]. Lopez-Legentil et al. [ 16 ] reported two distinct chemotypes in ascidian species: the purple morph of C. dellechiajei have the pyridoacridines shermilamine B ( 1) and kuanoniamine D ( 2) in tunic and its deacetylated forms ( 3, 4) in zooids, while the blue and green morphs comprised the C9-unsubstituted pyrridoacridines, ascididemin ( 5 ) and 11-hydroxyascididemin ( 6 ) in tunic and zooids as well. However, brown morphs consist low concentration of ascididemin. The advanced studies of the mitochondrial DNA of the distinct colour morphs of C. dellechiajei exhibited weak a correlation between the chemotypes, morphotypes (spicules), and genotypes with the clear relationship among the colour of the purple morph and the pyridoacridines. The purple morphs were found under the acidic conditions of tunic in the Cystodytes sp. 11 secondary metabolites, among which eight are indole alkaloids were reported from the ascidian Leptoclinides sp. [ 17 ]. The first group of Leptoclinides -derived indole metabolites consists of N -(1 H -indolyl-3-carbonyl)- d -arginine ( 7 ), N -(6-bromo-1 H -indolyl-3-carbonyl)- l -arginine ( 8 ), N -(6-bromo-1 H -indolyl-3-carbonyl)- l -histidine ( 9 ) and N -(6-bromo-1 H -indolyl-3-carbonyl)- l -enduracididine ( 10 ) compounds. Furthermore, the other metabolites leptoclinidamines A–C ( 11 – 13 ) were reported from the ascidian L. durus [ 18 ] and C 2 -a- d -mannosylpyranosyl- l -tryptophan ( 14 ) was isolated from L. dubius [ 19 ]. A new hexacyclic pyridoacridine alkaloid, nordehydrocyclodercitin ( 15 ) was reported from the ascidians, Aplidium sp. and A . cratiferum collected in Great Barrier Reef, Australia [ 20 ]. Nordehydrocyclodercitin was structurally related to stellettamine [ 21 ] and cyclodercitin [ 22 ], which is earlier reported from the sponge metabolites. Compound cycloshermilamine D ( 16 ) was reported from the ascidian Cystodytes violatinctus , it is an analogue of stellettamine with a 6-membered non-aromatic heterocycle in place of the thiazole ring [ 23 ]. Two new pyridoacridine alkaloids kuanoniamines E and F ( 17, 18 ), a new ring-opened pyridoacridine alkaloid, subarine ( 19 ); and with known ascididemin ( 5 ) and kuanoniamines A and D ( 20 – 22 ) were reported from unidentified ascidian samples collected from the Singapore coast [ 24 , 25 ]. Compound trunkamide A ( 23 ) was isolated from the Lissoclinum sp. and complete total synthesis by Wipf and Uto [ 26 ]. The chemical structures of cyclic peptides bistratamides F–I ( 24 – 27 ) were isolated from L. bistratum [ 27 ], and further confirmed by total synthesis [ 28 , 29 ]. Furthermore, the metabolites didmolamides A and B ( 28 – 29 ) were isolated from Didemnum molle and complete total synthesis [ 30 , 31 ]. Marine alkaloid, eudistomin X ( 30 ) was isolated from Micronesian ascidian Eudistoma sp. and the first total synthesis was achieved from phenylalanine as the chiral source [ 32 ]. Pyridoacridine alkaloids arnoamines A ( 31 ) and B ( 32 ) were isolated from the brownish purple ascidian Cystodytes sp. [ 33 ] and total synthesis of compounds ( 31, 32 ) was reported [ 34 ]. The arnoamines compounds were unusually found to incorporate deuterium at C-10 and C-11 of the pyrrole ring when dissolved in CDCl 3 /TFA-d. Piers et al. [ 35 ] reported the total synthesis of 17-methylgranulatimide ( 33 ) compound from photocyclization reaction of didemnimide C ( 34 ); and also demonstrated synthesis of isodidemnimide A ( 35 ), neodidemnimide A ( 36 ), and isogranulatimides A, B, C ( 37 – 39). The compound perophoramidine ( 40 ) was isolated from Philippine ascidian Perophora namei [ 36 ] total synthesis of compound ( 40 ) by halogen-selective tandem intramolecular Heck/carbonylation reaction [ 37 ]. Remarkably, perophoramidine is structurally similar to the previously reported communesins A ( 41 ) and B ( 42 ) [ 38 – 41 ]. Furthermore, Trieu et al. [ 42 ] reported about the total synthesis of Eudistomins Y1-Y7 ( 43 – 49 ), which are sub class of prevalent and biologically active β –carboline alkaloids, many of which have been isolated from the ascidian Eudistoma sp. [ 43 ] (Structure 1 ). Structure 1 Natural products diversity of marine ascidians (compounds 1 – 49 )

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Pharmacological Activity of Ascidian Compounds

Anti-microbial Activity Anti-bacterial Activity Four new sulphated alkanes/alkenes 2,6-dimethylheptyl sulphate, (4 Z ,7 Z )-4,7-decadienyl sulfate, (4 Z ,7 E )-4,7decadienyl sulphate, and (3 Z ,6 Z )-3,6,9-decatrienyl sulphate ( 50 – 53 ) were isolated from the hepatopancreas of the ascidian Halocynthia roretzi [ 44 ]. Compounds ( 50 – 53 ) showed 12 mm zones of growth inhibition against bacterial strain Vibrio alginoliticus and besides exhibited activity with fungal strains Mortierella ramaniana 10 mm zones at 0.2 mg/disk, respectively. Based on the results, Tsukamoto reported these simple sulfates may possibly play a physiological role in certain ascidian species. Two new anti-microbial metabolites, halocyntin and papillosin, were isolated from hemocytes of the solitary tunicate, H. papillosa were collected in Catalan coast, in Mediterranea Sea [ 45 ]. Both peptides showed potential zone growth inhibition against M. luteus (0.13–0.25 µg/mL) and E. coli (0.25–0.50 µg/mL), from this compound papillosin showed the potential value of anti-microbial activity compare to halocyntin. Amongst Ascidians, the family of Didemnidae have been described as a vital source of diverse MNPs with potent pharmacological properties. The potential important active metabolites such as didemnins, aplidine, and the tamandarins were reported from the family of Dideminidae [ 46 ]. Four new β -carboline based metabolites; Didemnolines (A–D) 54 – 57 were isolated from the ascidian Didemnum sp, collected in Northern Mariana Islands, United States [ 47 ]. Didemnolines C ( 56 ) shows 7 mm zone growth inhibition against E. coli and with Staphyloccocus aureus (9 mm). In addition, compound ( 54) shows potent cytotoxicity against human epidermoid carcinoma (KB cells) 0.28 µg/mL. Three new pyridoacridine alkaloids, isodiplamine, cystodytin K and lissoclinidine ( 58 – 60 ), and known alkaloids diplamine ( 61 ) and cystodytin J ( 62 ) were isolated from the ascidian Lissoclinum notti collected at Leigh Harbour, New Zealand [ 48 , 49 ]. Both compounds ( 58 – 59 ) were active against two marine bacteria Psychrobactor immobilis (1.5 µg/mL) and Planococcus citreus (1.5 µg/mL). Compounds ( 60, 61 ) showed zones of growth inhibition against B. subtilis (8, 9 mm) and E. coli (6, 3 mm) at the highest concentration 120 mg of pyridoacridine alkaloid compound, on to 6 mm paper disc. Furthermore, Pyridoacridine alkaloids inhibited the growth of fungal T. mentagrophytes (9, 6 mm), lissoclinidine was completely inactive against C. albicans and diplamine showed potent inhibition (12 mm), respectively. Eudistomins W and X ( 63 – 64 ) were isolated from the colonial ascidian Eudistoma sp., collected in on mangrove roots at Chuuk, Micronesia [ 50 ]. Eudistomins W and X showed a moderate growth inhibition against bacterial strains B. subtilis (17, 18 mm), E. coli (15, 20 mm) and S. aureus (11, 12 mm) at concentration 5 and 10 µg per disc, respectively. In addition, Eudistomins W, X inhibited the zone growth against fungi C. albicans (13, 18 mm) at similar loading doses. Marine alkaloids, Lissoclibadins ( 65 – 67 ), lissoclinotoxins E and F ( 68, 69 ) were isolated and reported from the ascidian Lissoclinum cf . badium , collected at coral reef station Manado, Indonesia [ 51 , 52 ]. Both compounds ( 65, 66 ) inhibited the growth of the marine bacterium Ruegeria atlantica (15.2 mm and 12.2 mm at 20 mg/disc), and compound ( 66 ) exhibited antifungal activity towards Mucor hiemalis (13.8 mm at 50 mg/disk). In addition, Lissoclibadins 1–3 have also showed cytotoxic against HL-60 (IC 50 = 0.37, 0.21, and 5.5 µM). Furthermore, four new polysulfur aromatic alkaloids, Lissoclibadins ( 70 – 73 ) were isolated from the same ascidian [ 53 ]. Compounds ( 70 – 73 ) inhibited the colony formation of Chinese hamster V79 cells with EC 50 values of 0.71, 0.06, 0.06, and 0.17 µM, respectively. Moreover, compounds ( 70 – 73 ) exhibited poor anti-microbial activity against E. coli , Staphylococcus aureus , and Saccharomyces cere v isiae . Simon-Levert et al. [ 54 ] isolated five marine meroterpenes which include two new meroterpenes, methoxyconidiol and didhydroconicol ( 74, 75 ) and three known derivatives, cordiachromene A ( 76 ), epiconicol ( 77 ) and conidone ( 78 ) from the Aplidium aff. Densum, collected in Masirah Island, Oman. These meroterpenes ( 74, 75 ) have inhibited the zone growth (MIC) against bacterial strains with E. coli (&gt;2 µM) and M. luteus (&gt;2 µM, 0.51 µM). Moreover, Compound ( 74 ) was a potential source of MNPs affecting the reproduction processes of sea urchin Sphaerechinus granularis and Paracentrotus lividus , inhibited the cleavage fertilised eggs. It interrupts M-phase development and completely blocks cytokinesis without any effect on DNA replication, most likely affecting microtubule dynamics [ 55 ]. Five new serinolipid derivatives, Shishididemniols A–E ( 79 – 83 ) were isolated from Didemnum sp. collected in Japan [ 56 ]. Compounds ( 80 – 83 ) ex

05

Anti-tuberculosis Activity

A series of pyrido [2,3,4-kl] acridin-6-one pyridoacridine alkaloid related to ascididemin were reported from the ascidian Lissoclinum notti collected in New Zealand coast [ 76 ]. Metabolites, N -(2-(6-oxo-6 H -pyrido[2,3,4-kl] acridin-4-ylamino)ethyl)pyrazine-2-carboxamide ( 129 ) and 2-(6-oxo-6 H -pyrido[2,3,4-kl]acridin-4-ylamino)ethyl pyrazine-2-carboxylate ( 130 ) inhibited the growth MIC of Mycobacterium tuberculosis H 37 Rv (2 µM) and also showed cytotoxicity against Vero and P388 cells (&gt;25 µM). The above study confirmed that ascididemin is a promising source for developing new anti-TB drugs in future (Structure 3 ). Structure 3 Anti-tuberculosis potentail compound ( 129 – 130 )

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Anti-fungal Activity

Anti-fungal active compound (2 S ,3 R )-2-Aminododecan-3-ol ( 131 ) was isolated from the ascidian Clavelina oblonga collected in Brazil [ 77 ]. Compound (131) showed remarkable MICs against Candida albicans (0.7 µg/mL) and C. glabrata (30 µg/mL). Moreover, 2-amino-alkanols and their unsaturated derivatives have been repeatedly reported in marine ascidians and sponges [ 78 ]. Furthermore, new metabolites of cadiolides A, B ( 132 – 133 ) were isolated from the ascidian Botryllus sp. [ 79 ]. Additionally, Won et al. [ 68 ] reported cadiolides E–H ( 102 – 105 ) from another ascidian Synoicum sp. Both compounds ( 102, 105 ) showed a potent anti-fungal activity zone growth inhibitory with C. albicans (IC 50 values of 7.62, 10.36 µM) [ 80 ]. Searle and Molinski [ 81 ] isolated the anti-fungal 2-amino alcohol ( 134 ) and their derivatives ( 134a, b ) from the Australian Didemnum sp. Compound ( 134) was related to sphingosine ( 135 ), a widely distributed amphiphilic amino alcohol. A synthetic peptide halocidin was isolated from Halocynthia aurantium and showed remarkable antifungal activity against C. albicans (1–4 µg/mL). Hence, halocidin peptide was considered as a potential source for the development of new antibiotic resistant mechanisms [ 82 ].

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Anti-viral Activity

A new furanone metabolite of rubrolides A, N ( 136 – 137 ), prunolide A ( 138 ) and known metabolite cadiolide B ( 133) were reported from the ascidian Synoicum sp. collected at Visakhapatnam coast, India [ 83 ]. Compounds (cadiolide B 133) , and prunolide A ( 138) showed a significant anti-viral activity against potent RNA virus Japanese encephalitis virus (JEV) at concentrations of 1 µg/mL. Furthermore, four new nucleoside derivatives ( 139 – 142 ) were reported from the ascidian Herdmania momus collected at coast of Jeju Island, Korea [ 84 ]. Rare nucleosides ( 139 – 142 ) have been tested the anti-viral activity against various human pathogenic viruses. Though, none of the isomers exhibited significant inhibition against human rhinoviruses (HRV14 EC 50 &gt; 100 µg/mL, CC 50 &gt; 100 µg/mL), poliovirus (PV3, EC 50 &gt; 100 µg/mL, CC 50 &gt; 100 µg/mL), and coxsackieviruses (CoxB1 or CoxB3, EC 50 &gt; 100 µg/mL, CC 50 &gt; 100 µg/mL).

08

Anti-HIV Activity

An unusual sulfated mannose, homopolysaccharide ( 143 ) also known as kakelokelose, was reported from the mucous secretion of the ascidian D. molle collected from Pohnpei, Micronesia and Manoda, Indonesia [ 85 ]. Compound ( 143 ) showed a remarkable anti-HIV activity determined 100% potential to inhibit infection with CEM cells by HIV strain RF at 0.3 µg/mL, whereas no cytotoxicity against CEM cells at concentrations 15 µg/mL. Furthermore, five lamellarins, the 20-sulfates of lamellarins B, C, L, lamellarin G 8-sulfate and lamellarin Z ( 144 – 148 ) were isolated from Didemnum chartaceum from the Great Barrier Reef, Australia. Unusually long relaxation times were observed for certain signals in their 1 H NMR spectra [ 86 ]. During further investigation, Reddy et al. [ 87 ] reported lamellarin α 20-sulfate ( 149 ) from an unidentified ascidian, collected in Indian waters. Compound ( 149 ) showed moderate inhibition of anti-HIV activity against HIV-1 protease (IC 50 16 µM). An anti-retro viral metabolite, cyclodidemniserinol trisulfate ( 150 ) was reported from the ascidian Didemnum guttatum collected at Ngerchaol Island, Palau. Compound ( 150 ) is very similar to didemniserinolipid A ( 151 ), reported from an Indonesian Didemnum sp. [ 88 ], though few significant variations between these two chemical structures, like the presence of an additional ring containing a glycine unit and the presence of sulfate groups, were observed. Moreover, Gonzalez et al. [ 88 ] also reported didemniserinolipids B and C ( 152 – 153 ) from the same ascidian species. Anti–HIV activity of compound ( 150 ) showed a modest inhibition against HIV-1 protease (IC 50 60 µg/mL) and with MCV topoisomerase IC 50 72 µg/mL. Compound ( 150 ) showed no selectivity for integrase inhibition. During the screening of anti-HIV agents from marine organisms, Donia et al. [ 89 ] reported two new cyclic hexapeptide alkaloid including mollamides B ( 154 ) and C ( 155 ), with known peptide keenamide A ( 156 ) from the tunicate Didemnum molle collected in Manado Bay, Indonesia. Compound ( 154 ) showed in vitro anti–HIV activity against HIV-1 human PBM cells (EC 50 48.7 µM). Lu et al. [ 90 ] isolated two new Thiazoline peptides, mollamides E and F ( 157 – 158 ) and one new a Tris-Phenethyl urea, molleurea A ( 159 ) from the same ascidian D. molle collected in Papua New Guinea. Compounds ( 157 – 159 ) were tested for anti-HIV activity in both an HIV integrase inhibition assay and a cytoprotective cell-based assay. Mollamide F ( 158 ) showed a moderate activity against both bio-assays with IC 50 values of 39 and 78 µM, and molleurea A ( 159 ) was effective in the cytoprotective cell-based assay (IC 50 60 µM) (Structure 4 ). Structure 4 Anti-fungal potential compounds ( 131 – 159 )

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Anti-protozoal Activity

Anti-malarial Activity The recent research outcome points out that ascidians may produce secondary metabolites with potential activity against malarial parasites. Mendiola et al. [ 91 ] reported anti-malarial activity of three ascidian species, Microcosmus goanus , Ascidia sydneiensis and Phallusia nigra collected at north-west Cuban coast. The crude compounds extracted by water and n-butanol showed 50% inhibition against P. falciparum growth at concentrations of (17.5, 20.9, 29.4 µg/mL), respectively. Meridianin is a small family of alkaloids, meridianins F, G ( 94, 95 ) were reported from the ascidian Aplidium meridianum [ 62 ]. Compound ( 85 ) was synthesized by Lebar et al. [ 92 ] and further investigation of meridianins A–G ( 95 ) which was physically synthesized by catalytic Domino amino reaction [ 93 ]. Compounds 85, 95, tested to anti-malarial inhibition against human malaria parasite P. falciparum, showed a moderate activity against both strains IC 50 50 and 4.4 µM [ 92 , 94 ]. Furthermore, Donia et al. [ 89 ] reported the anti-malarial activity of Mollamide B ( 154 ), showed modest activity against P. falciparum (D6 clone and W2 clone) with (IC 50 2.0, 2.1 µg/mL). Compound 154 showed an activity against Leishmania donovani , with IC 50 (18 µg/mL) and IC 90 35 μg/mL, respectively. The new brominated indole alkaloid, kingamide A ( 160 ) have isolated from the ascidian Leptoclinides kingi collected off Hook and Hardy Reefs in Australia [ 95 ]. No anti-malarial activity was observed against kingamide A at concentration 10 µM. New anti-malarial meroterpenoids, 2-geranyl-6-methoxy-1,4-hydroquinone-4-sulfate ( 161 ) and scabellones A–D ( 162 – 165 ) a family of pseudodimeric meroterpenoids were isolated from the ascidian Aplidium scabellum collected off Rabbit Island, New Zealand [ 96 ]. Remarkably, compounds 162 – 165 have rare benzo [ c ] chromene-7,10-dione scaffold among the MNPs. Compound ( 163 ) showed moderate potential activity against P. falciparum (K1 chloroquine-resistant strain) with IC 50 4.8 µM and also showed weak cytotoxicity with Leishmania donovani (25 µM), T. brucei rhodesiense (28 µM) and Trypanosoma cruzi (49 µM) respectively. The preliminary result of the anti-malarial activity of scabellone B (163) showed no noticeable apoptosis against human neutrophils. It is recommended that this drug like pseudodimeric meroterpenoid (scabellone B) may be utilized for developing new drug class for new treatments of malarial disease. Additionally, two new indole spermidine alkaloids, didemnidines A, B ( 166 – 167 ) reported from the ascidian Didemnum sp. collected from Tiwai Point, New Zealand [ 97 ]. Didemnidine B ( 167 ) showed modest in vitro growth inhibition against P. falciparum (IC 50 8.4 µM and T. brucei rhodesiense (9.9 µM). Anti-malarial tetrahydro- β -carbolines, (−)-7-bromohomotrypargine ( 168 ), and 3 alkylguanidine-substituted β -carbolines, opacalines A, B, and C ( 169-171 ), and their substitutes (+)-1 R -7-bromotrypargine ( 172 ) were isolated from the ascidian Pseudodistoma opacum collected at Maori Bay, New Zealand [ 98 ]. The structure of compound ( 168 ) is similar to recently reported sponge metabolite (+)-1 R -7-bromotrypargine ( 172 ), with compound 168 containing one additional methylene residue in the guanidinylated side chain (Davis et al. 2010). Remarkably, Van Wagoner et al. [ 99 ] have been reported structurally related trypargine metabolites 1-carboxytrypargine ( 173 ) and trypargimine ( 173a ) from the ascidian Eudistoma sp. Compounds (169 – 170) showed a modest antimalarial activity against chloroquine-resistant strain of P. falciparum (IC 50 2.5, 4.5 µM) [ 98 ]. A new anthrone-anthraquinone compound, albopunctatone ( 174 ), and known compound 1,8-dihydroxy-9,10-anthraquinone ( 175 ) were isolated from the ascidian Didemnum albopunctatum collected in Australian Great Barrier Reef [ 100 ]. Compound ( 174 ) showed a potential anti-plasmodial activity against chloroquine-resistant and malarial parasite, P. falciparum (IC 50 5.3 and 4.4 µM), and compound ( 175 ) was inactive at concentration 40 µM, respectively. Anti-protozoal compound, dioxothiazino-quinoline-quinone ascidian metabolite orthidine F ( 176 ), ascidiathiazone A ( 177 ) and their analogues ( 177 a, b ) have reported from New Zealand ascidian Aplidium sp. [ 101 ]. Compound ( 177 ) showed a moderately potent anti-protozoal activity against P. falciparum K1 strain (IC 50 3.3 µM), Trypanosoma brucei rhodesiense (IC 50 3.1 µM) and completely inactive against T. cruzi and Leishmania donovani and have shown poor cytotoxicity against a mammalian cell-line (IC 50 170 µM). A polyaromatic alkaloid, aplidiopsamine A ( 178 ) reported from Aplidiopsis confluata , collected at Tasmania in Australia coast [ 102 ]. Compound ( 178 ) showed a potential anti-malarial activity against chloroquine sensitive (3D7) with (IC 50 = 1.47 (3D7) and resistant (Dd2) strains of the malarial parasite, P. falciparum (IC 50 = 1.65 µM). In

10

Anti-trypanosomal Activity

New pyridoacridine alkaloids, 12-deoxyascididemin ( 189 ), and two well-known analogues, ascididemin ( 5 ) and eilatin ( 190 ) were isolated from the ascidian Polysyncraton echinatum collected in North West of Farquharson Reef, Australian coast [ 109 ]. Compounds ( 189, 5, 190 ) had shown potent anti-trypanosomal activity against Trypanosoma brucei brucei (IC 50 0.077, 0.032, 1.33 µM). Additionally, compounds ( 189, 5) showed a moderate cytotoxicity against HEK293 cell line (IC 50 7.63, 1.48 µM). Simarro and co-workers had reported 70 million populations of 37 sub-saharan African countries were affected deadly infectious disease [ 110 ], hence it is urgently required to develop new effective drugs to fight against African sleeping sickness (Structure 6 ). Structure 6 Anti-trypanosomal potential compounds ( 5 , 189 , 190 )

11

Anti-diabetic Activity and Anti-oxidant Activity

Four different group of MNPs reported from the ascidian species were found to inhibit human aldose reductase. From the red ascidians Botryllus leachi, compounds triphenylpyrrolo-oxazinones, lukianols A, B ( 191 a, b ) and known alkaloids ( 192, 193a, b ) were reported [ 111 , 112 ]. All these compounds hold the heterocyclic system and no less than two phenolic groups are present in the chemical structures [ 113 ]. Compounds, imidazole derivative ( 191) and pyrazine derivatives ( 193a, 193b) contain a common central nitrogenous heterocycle core. Compound lukianol B ( 191 ) showed a strong growth inhibitory (0.6–0.8 µM) against aldose reductase inhibitor (ARI) compared to other phenolic derivatives. Further, compounds ( 192, 193a, b) have shown moderate inhibitory activity against human aldose reductase (h-ALR2) with IC 50 21.4, 41.4, 19.4 µM. Novel β -carboline guanidine alkaloid, tiruchanduramine ( 194 ) were reported from Synoicum macroglossum collected in Tiruchandur coast, India [ 114 ]. Compound ( 194 ) exhibited a moderate α-glucosidase inhibitory activity (IC 50 78.2 µg/mL). Compound (194) is the first MNPs containing enduracididinamine, the decarboxylation product of enduracididine, a rare amino acid was obtained by hydrolysis of enduracidin from Streptomyces fungicidicus [ 115 ]. The absolute stereochemistry of this compound is not yet established. Krishnaiah et al. [ 116 ] have reported lamellarins γ , α and ɛ (195 – 197) and known lamellarin alkaloids, lamellarins M, K, K-diacetate, K-triacetate, lamellarins U, I, C-diacetate, and X-triacetates ( 198 – 205 ) from Didemnum obscurum collected at Tiruchandur coast, India. Compounds, lamellarins γ and K-triacetate ( 195 , 201 ) showed a more potent activity (3.28, 2.96 mM) than other biomolecules (Structure 7 ). Structure 7 Anti-diabetic and anti-oxidant potential compounds ( 191 – 205 )

12

Anti-inflammatory Activity

Two new tricyclic thiazine-containing quinolinequinone alkaloids, ascidiathiazones A and B ( 177 , 206 ) were reported from Aplidium sp. collected in New Zealand ascidian coast. Compounds ( 177 , 206 ) showed a potential inhibition against human neutrophils (IC 50 1.55, 0.44 µM), respectively [ 117 ]. Furthermore, rubrolide O ( 207 ) was reported from the Synoicum sp. collected in New Zealand coast. Rubrolide O is a new member of rubrolide family exist a mixture of E/Z -isomers. Compound ( 207 ) showed a modest inhibition against human neutrophil free radical release (IC 50 35 µM) [ 118 ]. Belmiro and co-workers reported anti-inflammatory properties of a dermatan sulfate similar to mammalian heparin from the ascidian Styela plicata , collected in Brazil coast [ 119 , 120 ]. The molecular characterization of this analogue have been tested by in vivo rat colitis model, showing a significantly decreased lymphocyte and macrophage recruitment as well as TNF- α , TGF- β , and VEGF production in the inflamed rat colon at concentration 8 mg/kg per day. New anti-inflammatory meroterpenoids, 2-geranyl-6-methoxy-1,4-hydroquinone-4-sulfate ( 161 ) and scabellone B (163) showed a moderate potent anti-inflammatory activity (21, 125 µM), and selective ability to inhibit neutrophil respiratory burst proves that meroterpenoid sulfates may have potential for developing novel marine drugs for treatment of inflammation [ 96 ]. Biologically active amino acid derivatives, herdmanines A–D ( 208 – 211 ) were reported from the ascidian Herdmania momus , the unusual D-form of arginine present in herdmanines A–C [ 121 ]. Both compounds ( 210, 211 ) showed adequate suppressive effects on the production of NO (IC 50 96 and 9 µM) and these compounds have the potential to inhibit the mRNA expression of iNOS. Additionally, compound 211 exhibited a strong inhibition of mRNA expression of pro-inflammatory cytokines IL-6. Further investigations are needed to search for potential anti-inflammatory MNP from the same ascidian. A series of anti-diabetic amino acid derivatives new congeners herdmanines E–L ( 212 – 220 ) and (−)-( R )-leptoclinidamine B were reported [ 122 , 123 ]. Indoleglyoxylyl derivatives, herdmanine K showed strong PPAR- γ activation in rat liver cells (Ac2F) 1 and 10 µg/mL in a cell-based luciferase reporter assay. Anti-inflammatory activity of methanol crude compounds extracted from the ascidian Eudistoma virde was exhibited modest anti-inflammatory activity at various concentration up to 200 mg/kg compare to the positive control Diclofenac [ 124 ]. The biological activity is similar to that one of other ascidians Synoicum sp. and Pycnoclavella kottae [ 48 , 118 ] (Structure 8 ). Structure 8 Anti-inflammatory potential compounds ( 161 , 163 , 177 , 206 – 220 )

13

Effect of Cardio Vascular Blockage and Central Nervous System

Marine alkaloid, lepadiformines A, B, C ( 221 – 223 ) have been reported from Clavelina moluccensis collected in Musha Islands, Djibouti [ 125 ]. Compounds ( 221 – 223 ) showed a potential action in frog atrial myocytes by blocking the background inward rectifying K + current, the biological activity of these each compounds varied basis on their chemical structure. The length of aliphatic chain at position C13 was involved in K r channel blockage of I K 1 by lepadiformine A (1.42 µM), lepadiformine B (1.56 µM) in cardiac muscle and lepadiformine C was poorly blocked I K 1 . Structurally similar too related quinolizidine and decahydroquinoline alkaloids, (−)-pictamine and (−)-lepadin B ( 224 – 225 ) were reported from Clavelina picta and C. lepadiformis . The pharmacological properties of compounds ( 224 – 225 ) were tested at neuronal nicotinic acetylcholine receptors (nAChRs) including (α4β2 and α7) expressed in Xenopus oocytes. Both compounds ( 224 – 225 ) were found to act as reversible blockers; acetylcholine-elicited currents through α4β2 and α7 receptors were blocked by (−)-pictamine (IC 50 1.5 and 1.3 mM), and by (−)-lepadin B (IC 50 0.9 and 0.7 mM), respectively [ 126 , 127 ]. Compound, eusynstyelamides A–C ( 226 – 228 ) and known metabolites homarine and trigonelline were reported from Eusynstyela latericius collected in Great Barrier Reef, Australia [ 128 ]. The spectral data of eusynstyelamide A ( 226 ) was similar to previously reported compound eusynstyelamide from a Fijian Ascidian E. misakiensis [ 129 ], remarkably, the compound showed opposed specific rotations. This study proved that the structure of eusynstyelamide was elucidated mistaken by Swersey et al. [ 129 ] and the authors have predicted the correct chemical structure of this compound and named as eusynstyelamide A. Both compounds 227, 228 showed neuronal nitric oxide synthase inhibition IC 50 values of 4.3–5.8 µM. Bioassay-guided isolation resulted in identification of new tyrosine derivatives, botryllamides K, L ( 229, 230 ), with 6 known compounds, botryllamides A–C ( 231 – 233 ), botryllamide G ( 234 ) and perspicamides A and B ( 235 – 236 ) from the ascidian Aplidium altarium collected in Australia [ 130 , 131 ]. These tyrosine derivatives were tested for their cytotoxicity against the SF268 (central nervous system), from these botryllamides K and C showed potent cytotoxicity inhibition (IC 50 78, 75 µM) at concentration 10 µM/mL. Recently, botryllamide G was reported as a potent inhibitor of the membrane-localized human transporter protein ABCG2 [ 132 ] (Structure 9 ). Structure 9 Compounds with potential activity of cardio vascular blockage and central nervous system ( 223 – 236 ) Chem-biological evaluation of methanol crude extract from the ascidian Eudistoma virde showed a dose-dependent depression of locomotor activity, indicating central nervous system (CNS) depressant activity. The extract at 200 mg/kg concentration showed substantial depression activity of 90.7% which was lower compare to the positive control drug chloropromazine 99% at 4 mg/kg concentration [ 124 ]. The similar results of CNS depressant activity in the crude compounds of Distapila nathensis at concentration 100 mg/kg was reported earlier [ 133 ].

14

Anti tumor/Anti-cancer, Anti-proliferative Activity

The drug discovery of anti-cancer activity has been the main area of interest in the field of natural product chemistry. Tunicates are particularly successful to yielding anti-tumor compounds; several MNPs were under various clinical trials in Europe and USA. With the continuous searching of effective and targeted anti-cancer drugs, in this section we explore the unique perspectives, novel biomolecules isolated from marine ascidians with promising pharmacological potential source of anti tumor/anti-cancer and anti-proliferative activity. Three new linear cytotoxic tripeptides, virenamides A–C ( 237 – 239 ) have reported from the Didemnid ascidian Diplosoma virens collected in Great Barrier Reef, Australia [ 134 ]. Virenamide A ( 237 ) exhibited effective cytotoxicity against various cultured cells with P388 (IC 50 2.5 µg/mL), and showed moderate cytotoxicity against A549, HT29, and CV1 cells line (IC 50 10 µg/mL). Compounds ( 238 – 239 ) showed modest cytotoxicity against P388, A549, HT29, and CV1 cells. Additionally, virenamide A ( 237 ) showed topoisomerase II inhibitory activity (IC 50 2.5 µg/mL). Lindsay and co-workers have been isolated pyrido [2, 3, 4- kl ] acridine-based alkaloid ascididemin 2 ( 55 ) from the Didemnum sp. [ 135 ]. Ascididemin 2 showed remarkable significant cytotoxicity against human tumor cells; P-388 mouse leukemia (IC 50 0.4 µM), human colon HCT II6 (IC 50 0.3 µM), and with human breast MCF7 (IC 50 0.3 µM), respectively. In continuing search of MNPs to find anti-tumor drugs, Koulman et al. [ 136 ] was tested the cytotoxicity of colonial ascidian Didemnum lahillei , Aplidium glabrum, Molgula manhattensis collected in Lake Grevelingen and Oosterschelde estuary, Netherland. The crude extract of A. glabrum and M. manhattensis showed modest cytotoxicity against colon adenocarcinoma cells (IC 50 5, 8 µg/mL). The crude compound of D. lahillei showed moderate cytotoxicity against colon adenocarcinoma cell lines (IC 50 33 µg/mL) and with small cell lung carcinoma (IC 50 49 µg/mL), respectively. Two new dimeric alkaloids, lissoclinotoxins E, F ( 68, 69 ) were isolated from the Philippine didemnid ascidian collected in Sabtang Reef, Batanes Islands [ 137 ]. Both compounds ( 68, 69 ) showed potent cytotoxicity growth inhibition against MDA-MB-468 human breast carcinoma cell line (IC 50 2.3, 1.5 µg/mL), respectively. Lissoclinotoxins E and F shown potent cytotoxicity towards the MDA-MB-468 (PTEN −/− ) and the MDA-MB-435S (PTEN +/+ ) cell lines. Lissoclinotoxin F showed a threefold higher cytotoxicity against the PTEN deficient cell line. During the chemical investigation of Brazilian tunicates Didemnum granulatum, new alkaloid didemnimide E ( 242 ), and a new G2 checkpoint inhibitor and known marine alkaloids didemnimides A ( 240 ) and D ( 241) were reported [ 138 ]. Further investigation, authors worked in the same ascidian species was reported isogranulatimide ( 37 ) with two minor compounds granulatimide ( 243 ) and 6-bromogranulatimide ( 244 ) [ 139 ]. Both compounds ( 243, 37 ), showed activity as an inhibitor of the G2 cell cycle checkpoint in vitro and combined with DNA damaging p53 cancer cells (IC 50 1–1.8 µM). Anti-cancer effective marine alkaloid, mollamides B, C ( 154, 155 ) reported from Didemnum molle. Mollamide B ( 154 ) showed modest cytotoxicity against non-small cell lung cancer H460 (IC 50 29 µM), CNS cancer cell line SF-268 (IC 50 42 µM), and breast cancer cell line MCF7 (IC 50 44 µM) at concentration 100 µM [ 89 ]. Mollamide C exhibited poor cytotoxicity with murine leukaemia L1210 cells and human breast MCF-7 cells lines. From the Australian ascidian A. confluata , marine alkaloid, aplidiopsamine A ( 178 ) was reported, compound ( 178 ) exhibited moderate cytotoxicity against HEK-293 cell line (IC 50 120 µM) at higher doses [ 102 ]. From the crude extracts of tunicate Leptoclinides dubius, the first Leptoclinides -derived indole compounds: N -(1 H -indolyl-3-carbonyl)- d -arginine ( 7 ), N -(6-bromo-1 H -indolyl-3-carbonyl)- l -arginine ( 8 ), N -(6-bromo-1 H -indolyl-3-carbonyl)- l -histidine ( 9 ) and N -(6-bromo-1 H -indolyl-3-carbonyl)- l -enduracididine ( 10 ) were reported by García et al. [ 17 ]. Remarkably, the major group of these compounds are nitrogen-containing compounds with aromatic heterocycles. Compounds ( 7 – 9) showed 80–100% inhibition of cytotoxic against P-388 cells and KB cells at 10 µg/mL. Furthermore, four new meroterpenoids such as conidione ( 245 ), conicol ( 246 ), 2-[(1′ E )-3′-methoxy-3′,7′-dimethylocta-1′,6′-dienyl]benzene-1,4-diol ( 247 ) and conitriol ( 248) , and five known compounds and their derivatives ( 76 , 249 – 253 ) were isolated from the Mediterranean ascidian Aplidium conicum collected in Tarifa Island, Spain [ 140 ]. In further investigation of the same ascidian species which was collected from Alghero, Italy; two new unique alkane derivatives, conicaquinones A (254) and B ( 255 ) were reported by Aiello et al. [ 140 ]. Compound

15

Recent Developments and Future Directions

Ascidians have become one of the most vital resources of MNP in the last decades, and more than 800 numbers of compounds with unusual chemical structures have been isolated and their biological activity reported from various ascidian species. Discovery of novel biomolecules are increasing nowadays as we achieved better understanding of marine chemical ecology and their molecular and functional aspects. Progresses in other scientific fields such as chemogenomics, computational biology, genomics, proteomics, metabolomics and fluxomics also have potential applications in ascidian chemical diversity and their biomedical applications. Successful Ascidian Marine Natural Products in Clinical Development Nature products chemistry research has become much more applied, targeting compounds, which exhibit pharmacologically useful biological activities. Till date there are few metabolites reported from the ascidian were approved by FDA and has reached Phase I, II clinical trials, the list are presented in (Table 1 ). Didemnin B ( 564 ) was reported from Trididemnum solidum (Family Didemnidae), showed strong anti-viral and invivo cytotoxicity [ 241 , 242 ]. Total synthesis, complete spectroscopic characterization and single-crystal X-ray structure of metabolite ( 564 ) was reported [ 243 – 245 ]. Didemnin B was the first MNPs to enter phase I and II clinical trials as an anti-cancer agent. Previous studies demonstrated that compound ( 564 ) strongly inhibits palmitoyl protein thioesterase in a non-competitive manner [ 246 , 247 ] while this low affinity target did not completely show inhibition at nano molar concentration. Compound ( 564 ) had showed potential activity against herpes simplex virus [ 248 ] and also against Ehrlich’s carcinoma in mice [ 249 ]. During initial cancer trials, didemnin B exhibited modest activity and displayed the constraint for the treatment with anti-emetics [ 250 ]. In-vitro test has demonstrated that compound ( 564 ) was showed potential activity against colorectal cancer cells [ 251 ], lymphatic [ 252 ] and prostate cancers [ 253 ]. In addition, compound ( 564 ) was submitted to various Phase I trials [ 250 , 254 ] and Phase II clinical trials against non-small cell lung cancer (NSClC) [ 255 ], breast cancer [ 256 ] small-cell lung cancer [ 257 ], non-Hodgkin’s lymphoma [ 258 ], metastatic melanoma [ 259 ], glioblastoma multiforme [ 260 ], and CNS tumours [ 261 ]. All these trials of compound ( 564 ) caused significant neuromuscular toxicity and no objective tumour responses. However, compound ( 564 ) was exhibited activity in patients with advanced pretreated non-Hodgkin’s lymphoma, but trials are on hold owing to onset of severe fatigue in patients [ 262 ]. Other trials were terminated because of high incidence of anaphylaxis [ 263 ], currently all the clinical trials of compound ( 564 ) are on hold. Table 1 Successful ascidian marine natural product in clinical development Compound name Natural product or derivative Collected source organism Biosynthetic class of agent Molecular target Disease area Clinical status Company/institution References Ecteinascidin (ET-743) Natural product Ecteinascidia turbinata NRPS-derived alkaloid Minor groove of DNA Cancer FDA approved (EU approved only) Yondelis 279 Plitidepsin (aplidine) Natural product Aplidium albicans Cyclic depsipeptide Rac1 and JNK activation Cancer Phase III orphan drug* PharmaMar 13, 14 Didemnin B Natural product Trididemnum solidum Cyclic depsipeptide Anti-viral agent against DNA and RNA virus Cancer Phase III (stopped) NCI PharmaMar 278 Trabectedin analog (PM01183) Derivative Tunicate NRPS-alkaloid Minor groove of DNA, nucleotide excision repair Cancer Phase I Midostaurin Semisynthetic analogue of 1 Ascidian Indolocarbazole Flt-3,PKC, VEGFRs Cancer Phase III a NCI 293 Lestaurtinib (CEP-701) Synthetic analogue of 1 Ascidian Indolocarbazole Flt-3, JAK-2, Trk-A, Trk-B, Trk-C Cancer Phase III b NCI 295 Edotecarin (J-107088) Synthetic analogue of 1 Ascidian Indolocarbazole Potent stabilizers of DNA topoisomerases Cancer Phase III Pfizer 324 Enzastaurin ( LY317615 ) Synthetic analogue of 1 Ascidian Indolocarbazole PKCβ, GSK-3β Cancer Phase III c Eli Lilly C.T. N NCT00332202 Becatecarin (XL 119) Synthetic analogue of 1 Ascidian Indolocarbazole Potent stabilizers of DNA Cancer Phase II/III NCI C.T. N NCT00090025 UCN-01 Synthetic analogue of 1 Ascidian Indolocarbazole PKC Cancer Phase II NCI 301 CEP-2563 (prodrug of CEP-751) Synthetic analogue of 1 Ascidian Indolocarbazole Trk-A, Trk-B, Trk-C Cancer Phase I Cephalon 308 CEP-1347 (KT7515 synthetic analogue of 1 Ascidian Indolocarbazole JNKs Parkinson Phase II Cephalon C.T. N NCT00040404 Sautosporine (AM-2282) Synthetic analogue of 1 Ascidian Indolocarbazole PKC, JAK2, CamKIII Cancer Preclinical Kyowa Hakko Kirin (originator) 314 NCI National Cancer Institute, CTN clinical trial number * Plitidepsin approved orphan drug status by the European Medicines Agency for treating acute lymphobl

16

Modern Instrumentation and Computational Biology

Marine ecosystem forms an important source of unique compounds with high structural uniqueness and incomparable chemical properties. At the core of MNPs discovery is the identification procedure and NMR stays on the most useful tool [ 310 ]. At this time, natural products chemistry research is progressing a dynamic comeback in the modern drug discovery. Relatively more advances have taken place concerning the inherent capabilities of NMR apparatuses, able to reduce experiment times and increase sensitivity toward more efficient analyses of novel compounds present in µM level [ 311 ]. The advance of high resolution magic angle spin NMR (HR-MAS NMR) probes is most useful to analyse intact tissues. Nevertheless, while (HR-MAS NMR) is incorporated in food chemistry where both primary and secondary metabolites are of importance, it has not been yet widely introduced in natural products chemistry [ 312 ]. Queiroz Junior et al. have impressively demonstrated the significance of the synergy between NMR hardware and innovative pulse sequences. It is the first report that an ultrafast COSY pulse sequence is applied to a hyphenated LC–NMR separation of crude extracts (Ex. three natural flavonoids; naringin, epicatechin and naringenin). The detection volume was only 60 mL, while two scans have proven sufficient to get spectra with optimized resolution and sensitivity. This application portrays the generality of ultrafast methodologies in natural product chemistry, placing LC–NMR as an effective analytical tool [ 313 , 314 ]. For example, NMR experiments such as DOSY and JRES were also very useful routine methodology for unraveling new chemical structures. NMR spectroscopy tirelessly continues leading this procedure. Furthermore, decisive chemical structural information could be derived from statistical interpretation methods applied in metabolomics such as statistical heterospectroscopy (SHY) [ 315 ], statistical total correlation spectroscopy (STOCSY) [ 316 ], heteronuclear single quantum correlation spectroscopy (HSQC), heteronuclear multible-bond correlation Spectroscopy (HMBC), Subset optimization by reference matching (STORM) [ 317 ], cluster analysis statistical spectroscopy (CLASSY) [ 318 ], multivariate statistical analysis of natural products fragments [ 319 ]. Nearly, dereplication analysis is necessary for computational support of data handling, processing and for structure elucidation purpose. Whereas user-friendly and sophisticated software packages are easily reached for effective data mining, they are not widely used for dereplication purposes in marine natural product chemistry [ 320 ]. However, the structure elucidation is most challenging task mainly due to uniqueness of natural products and unexpected spectral patterns and the residual complexity frequently noticed. For instance, prediction and simulation software such as PERCH, in combination with 1 H iterative full spin analysis (HiFSA approach), given an accurate distinction of natural products with nearly identical NMR spectra. As, proposed by the authors as a tool for puzzling qNMR analyses, it could be an alternative source of dereplication data [ 321 ]. Moreover, computer-assisted structural elucidation (CASE) is the techniques of using software that allows users to input their NMR data, and through matching algorithms to generate all possible molecular structures. For this purpose, software used are mainly the Structure Elucidator by ACD Labs, StrucEluc and CCASA [ 322 – 324 ]. Nevertheless, the success of these approaches is dependent on the quality of the spectra to be processed and the efficacy of the algorithms used. Furthermore, the software used present an inherent dependence on the databases from which data are extracted. Unfortunately, NMR databases dedicated to NPs appear as in-house, fragmented attempts, or are chemical group/organism/NMR experiment/solvent, among others, specific. For instance, MarinLit, and AntiBase, specialize in marine, fungal and microorganism NPs, NAPROC-13 is based on 13C resonances [ 325 ], while recently compiled TOCCATA uses 13C-labeled NPs [ 326 ]. Commercial NMR databases are limited to few vendors, like the SpecInfo database of Wiley and Bruker’s NMR database [ 327 , 328 ].

17

LC–MS and 1 H-NMR Metabolomics

Recent developments in analytical methods have resulted in many different platforms for metabolomic investigation. From these, liquid chromatography–mass spectrometry (LC–MS) [ 329 ], and nuclear magnetic resonance spectroscopy (NMR) based approach are generally preferred analytic methods because they are based on the physical properties of MNPs, which are not influenced by other external factors and easily reproducible [ 330 ]. In the recent years, NMR combined with metabolomics tool is increasingly utilized for its systematic manner of profiling chemical finger prints of individual samples, either plant or animals [ 329 , 330 ]. NMR-metabolomics snap shots the organism’s metabolites or biomolecules that are present in a given quantity at the given time point [ 331 , 332 ]. Metabolomics can be used in functional genomics and to differentiate marine organism from external variation. The metabolomics of biota is compilation of all its primary and secondary metabolites using 1 H-NMR and 2D-COSY spectroscopy methods. Kim and co-authors reported the protocol NMR based metabolomics of plant species [ 332 ]. Tikunov et al. [ 333 ] carried out study of taxonomy based metabolite profiling of an oysters using NMR metabolomics along with Multivariate Statistical Analysis Approach (MSAA). Additionally, in manila clam [ 334 ], corals [ 335 ], and LC–MS based metabolomic approach in marine bacteria [ 336 ], studies utilized the same methodology for classifying biomolecules based on their taxonomy. In earlier study, Halouska and co-workers [ 337 ] predicted the in-vivo mechanism of action for drug leads against anti-tubercular activity using NMR metabolomics and orthogonal partial least square-discriminant analysis (OPLS-DA). Mass spectrometry based metabolomics approach can provide significant information about the discrimination between the species using multivariate statistical analysis, classifying chemical groups, discriminate the metabolites with unknown biological potencies [ 338 ]. A typical metabolomics profiling requires enormous number of samples to generate the results that are statistically rigorous. Besides, highly sensitive and accurate instrumentation, powerful software tools (e.g. XCMS-METLIN) are essential to address the vast amount of data generated by these experiments [ 339 ]. The recent development in the field of natural products chemistry and LC–MS/NMR based metabolomics research on marine origin secondary metabolites exhibits diverse range of biological properties for developing new therapies to improve the health of individuals across the universe suffering from various deadly diseases such as infectious disease malaria, HIV, neurological and immunological diseases and cancer [ 329 , 330 , 339 ]. The application of LC–MS based metabolic profiling of biological systems has gained more extensive use in identifying drug metabolite, developing metabolite maps and lending clues mechanism of bioactivation [ 338 ]. However, the knowledge of the metabolite accumulates in different ascidians chemical diversity are meagre. Recently, Palanisamy et al. [ 340 ] reported the metabolic profiling of invasive ascidian S. plicata and Mediterranenan ascidian A. mentula collected in Messina coast using LC–MS and multivariate statistical analysis. The results of this study confirmed that LC–MS based metabolomics method could be used as reliable tool for taxonomic classification of marine ascidian species and species discrimination in future studies. Ascidian, S. plicata showed significant anti-microbial activity against Burkholderia mallei (10 mg/mL) [ 341 ], and S. plicata fraction SP50 exhibited strong inhibition and induced apoptosis against cervical carcinoma (HeLa) and colon carcinoma (HT29) with IC50 (33.27 and 31.66 μmol/L).

18

Recent Biotechnology Advances

In a new marine drug discovery approach, structurally more complex MNPs was moved the next step from discovery to clinical trials based upon the strength of the industrial reproducibility. The discovery of novel marine drugs will continue to diversify. Research laboratories, academic entrepreneurs, and innovative biotechnology industries will play major role in the discovery of novel marine drugs. The industrial collaboration program between natural products researchers and biotechnology industries will be instrumental to the primary clinical trials and mechanism of action studies crucial to provide the compelling preclinical data to create ample interest from larger pharmaceutical companies to lead and support for drug discovery program of MNPs. Also, it is essential to identify molecular targets for strongly active biomolecules and the ability to synthetically produce novel biomolecules to progress and discover new drugs. A recent development in biotechnological approach is revolutionizing the field of natural products chemistry. It is worth to mention here, during the isolation process was able collect only tiny amount strongly active biomolecules. It is very hard to collect in required quantity, the advanced techniques and the availability of new methods in chemical and biological synthesis have provided access to even the most complex of drug lead structures. High advanced developments in analytical tools and molecular biological science facilitate to identify the primary producers of secondary metabolites from symbiotic assemblage, and enable researchers to further explore the marine microbial chemical diversity for drug like biomolecules. Furthermore, those advances aide the characterization of several biosynthetic gene clusters and pathways and ultimately allow for their manipulation. Marine microbial chemical diversities are now easily explored drug like compounds using effective biosynthetic genetic engineering and in vitro multi enzyme synthesis methods [ 342 ]. Remarkably, David Hopwood’s group [ 343 ] has biosynthesized anti-biotic compound actinorhodin from Streptomyces coelicolor by cloning and heterologous expression of an entire biosynthetic pathway. Using genetic engineering techniques, Donia et al. [ 344 ] were prenylated anti-tumor compound trunkamide which is previously isolated in ascidian and different genera of cyanobacteria in E. coli culture. Didmnid ascidian species specificity of symbiosis and secondary metabolism in ascidian species were reported [ 344 ], collected in Florida coast. In this study, species specific and location-specific components were observed in Dideminid ascidian microbiomes and metabolomes. It is concluded that the biotechnological approaches in the field of natural products chemistry is more useful for sustainable supply of high quality marine drugs.

19

Conclusions

This review study represents trends in chemical diversity of marine ascidians and potential biomolecules, covering the various tunicates family, recent developments and future direction and modern biotechnology advances are highlighted. Remarkably, Genus Didmnium sp. is most studied species in this group followed by Aplidium sp., Synoicum sp., and Eudistoma sp. collected from coral reefs, intertidal regions, shallow water and mangrove ecosystem which facilitates potential bioprospecting. Several MNP isolated from ascidian that are in various phase of pre-clinical and clinical studies from that Ecteinascidia and aplidine have great potential to reach market. Anti-cancer drugs are the main area of interest in the screening of MNPs from ascidians (64%), followed by anti-malarial (6%) and remaining others. It is worth to note here, as the major financial support for the screening of new MNPs is made in cancer research [ 344 ]. The data discovered here undoubtedly confirmed that promising value of MNPs and their derived analogs are most important candidates for further pharmaceutical studies for discover new therapeutic treatment the anti-tumor/anti-cancer Anti-HIV and various diseases drug pipeline. The unique chemical structures and novel chemical class of ascidians and promising biological activity which make them excellent candidates for development of many first class marine drugs in the near future with current advanced sampling methods, highly advanced analytical tools, new methods for genetic, chemical dereplication, molecular biology tools, LC–MS, NMR metabolomics approach, nature bank databases, computational biology, directed biosynthesis and biosynthetic pathway and high throughput screening the efficiency of exploring MNPs to discover novel therapeutics has increased significantly. It is concluded from this study, Ascidian resources contains vast pool of novel metabolites, exploring drug-like biomolecules will provide promising biomolecules with potential therapeutic use which may serve as lead candidates for drug discovery program.

Article Details
DOI10.1007/s13659-016-0115-5
PubMed ID28097641
PMC IDPMC5315671
JournalNatural Products and Bioprospecting
Year2017
AuthorsSatheesh Kumar Palanisamy, Natesan Mannangatti Rajendran, Angela Marino
LicenseOpen Access — see publisher for license terms
Citations122